species:   Clros
pid:       PID2226
parent:    cro-mir-20
paralog:   
locus:     CADEHS020000004.2:610881-610966
matures:   ['UCUCUUCAAGUCGUGAGCU', 'GGCAUGAGUCCUGAGUCGAG']
srr:       ERR5950791
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950791.cram CADEHS020000004.2:610881-610966

2 out of bounds
3 alignments
1 proper strand
1 stranded perfect matches

*********************                                            *********************
AGGCAUGAGUCCUGAGUCGAGCAAUGGUGUGUUUGUCAUGCGCCUCAAACAUUUAUUGGCCAUUAUUUCUCUUCAAGUCGUGAGCU
...(((((.(...(((..(((.(((((((((((((..........)))))))......)))))).))))))....).)))))....
-------------------------------------------------------------------UCUCUUCAAGUCGUGAGCU l=19 a=1 c
-GGCAUGAGUCCUGAGUCGAG----------------------------------------------------------------- l=20 a=0 c*
-------------------------------------------------------------------UCUCUUCAAGUCGUGAGCU l=19 a=1 ma
-GGCAUGAGUCCUGAGUCGAG----------------------------------------------------------------- l=20 a=0 ma*

-------------------------------------------------------------------UCUCUUCAAGUCGUGAGCU l=19 a=1 (c,ma)

mb-01010
ax-1001001
ku-01
ss-100010001100
fn-001
